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java.lang.Objectloci.formats.FormatHandler
loci.formats.FormatReader
loci.formats.in.BioRadReader
public class BioRadReader
BioRadReader is the file format reader for Bio-Rad PIC files.
Field Summary | |
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static String[] |
NOTE_NAMES
List of note types. |
Fields inherited from class loci.formats.FormatReader |
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collectMetadata, core, filterMetadata, group, in, metadata, metadataStore, normalizeData, saveOriginalMetadata, series, THUMBNAIL_DIMENSION |
Fields inherited from class loci.formats.FormatHandler |
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currentId, debug, debugLevel, format, statusListeners, suffixes |
Fields inherited from interface loci.formats.IFormatReader |
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CAN_GROUP, CANNOT_GROUP, MUST_GROUP |
Constructor Summary | |
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BioRadReader()
Constructs a new BioRadReader. |
Method Summary | |
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String[] |
getUsedFiles()
Returns an array of filenames needed to open this dataset. |
protected void |
initFile(String id)
Initializes the given file (parsing header information, etc.). |
boolean |
isThisType(byte[] block)
Checks if the given block is a valid header for this file format. |
byte[] |
openBytes(int no,
byte[] buf)
Obtains the specified image from the current file into a pre-allocated byte array of (sizeX * sizeY * bytesPerPixel). |
Methods inherited from class loci.formats.FormatHandler |
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addStatusListener, debug, getFormat, getStatusListeners, getSuffixes, isThisType, isThisType, removeStatusListener, setDebug, setDebugLevel, setId, status, status, status, trace, trace |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Methods inherited from interface loci.formats.IFormatHandler |
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getFormat, getSuffixes, isThisType, isThisType, setId |
Methods inherited from interface loci.formats.StatusReporter |
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addStatusListener, getStatusListeners, removeStatusListener |
Field Detail |
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public static final String[] NOTE_NAMES
Constructor Detail |
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public BioRadReader()
Method Detail |
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public boolean isThisType(byte[] block)
IFormatReader
public String[] getUsedFiles()
IFormatReader
getUsedFiles
in interface IFormatReader
getUsedFiles
in class FormatReader
public byte[] openBytes(int no, byte[] buf) throws FormatException, IOException
IFormatReader
no
- the image index within the file.buf
- a pre-allocated buffer.
buf
for convenience.
FormatException
- if there was a problem parsing the metadata of the
file.
IOException
- if there was a problem reading the file.protected void initFile(String id) throws FormatException, IOException
FormatReader
initFile
in class FormatReader
FormatException
IOException
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