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Packages that use loci.formats | |
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loci.formats | Bio-Formats: a library for reading and writing popular microscopy file formats. |
loci.formats.codec | |
loci.formats.gui | |
loci.formats.in | |
loci.formats.out | |
visad.data.bio | Provides data forms for handling common microscopy formats. |
Classes in loci.formats used by loci.formats | |
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AxisGuesser
AxisGuesser guesses which blocks in a file pattern correspond to which dimensional axes (Z, T or C), potentially recommending an adjustment in dimension order within the files, depending on the confidence of each guess. |
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ClassList
ClassList is a list of classes for use with ImageReader or ImageWriter, parsed from a configuration file such as readers.txt or writers.txt. |
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CoreMetadata
Encompasses core metadata values. |
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FilePattern
FilePattern is a collection of methods for handling file patterns, a way of succinctly representing a collection of files meant to be part of the same data series. |
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FormatException
FormatException is the exception thrown when something goes wrong performing a file format operation. |
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FormatHandler
Abstract superclass of all biological file format readers and writers. |
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IFormatHandler
Interface for all biological file format readers and writers. |
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IFormatReader
Interface for all biological file format readers. |
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IFormatWriter
Interface for all biological file format writers. |
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IRandomAccess
Interface for random access into structures (e.g., files or arrays). |
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Location
Pseudo-extension of java.io.File that supports reading over HTTP. |
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Log
A simple logging class. |
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MetadataRetrieve
TODO - MetadataRetrieve javadoc. |
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MetadataStore
A proxy whose responsibility it is to marshal biological image data into a particular storage medium. |
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RandomAccessStream
RandomAccessStream provides methods for "intelligent" reading of files and byte arrays. |
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ReaderWrapper
Abstract superclass of reader logic that wraps other readers. |
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ReflectedUniverse
A general-purpose reflection wrapper class. |
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ReflectException
ReflectException is the exception thrown when something goes wrong performing a reflected operation with ReflectedUniverse. |
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StatusEvent
A event indicating a status update. |
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StatusListener
A listener for status updates. |
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StatusReporter
Interface for components capable of reporting status updates. |
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TiffIFDEntry
This class represents a single raw TIFF IFD entry. |
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TiffRational
A rational number (numerator over denominator). |
Classes in loci.formats used by loci.formats.codec | |
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FormatException
FormatException is the exception thrown when something goes wrong performing a file format operation. |
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ReflectedUniverse
A general-purpose reflection wrapper class. |
Classes in loci.formats used by loci.formats.gui | |
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IFormatHandler
Interface for all biological file format readers and writers. |
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IFormatReader
Interface for all biological file format readers. |
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ImageWriter
ImageWriter is the master file format writer for all supported formats. |
Classes in loci.formats used by loci.formats.in | |
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FormatException
FormatException is the exception thrown when something goes wrong performing a file format operation. |
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FormatHandler
Abstract superclass of all biological file format readers and writers. |
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FormatReader
Abstract superclass of all biological file format readers. |
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IFormatHandler
Interface for all biological file format readers and writers. |
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IFormatReader
Interface for all biological file format readers. |
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LegacyQTTools
Utility class for working with QuickTime for Java. |
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Location
Pseudo-extension of java.io.File that supports reading over HTTP. |
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MetadataStore
A proxy whose responsibility it is to marshal biological image data into a particular storage medium. |
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RandomAccessStream
RandomAccessStream provides methods for "intelligent" reading of files and byte arrays. |
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ReflectedUniverse
A general-purpose reflection wrapper class. |
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ReflectException
ReflectException is the exception thrown when something goes wrong performing a reflected operation with ReflectedUniverse. |
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StatusReporter
Interface for components capable of reporting status updates. |
Classes in loci.formats used by loci.formats.out | |
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FormatException
FormatException is the exception thrown when something goes wrong performing a file format operation. |
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FormatHandler
Abstract superclass of all biological file format readers and writers. |
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FormatWriter
Abstract superclass of all biological file format writers. |
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IFormatHandler
Interface for all biological file format readers and writers. |
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IFormatWriter
Interface for all biological file format writers. |
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LegacyQTTools
Utility class for working with QuickTime for Java. |
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ReflectedUniverse
A general-purpose reflection wrapper class. |
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StatusReporter
Interface for components capable of reporting status updates. |
Classes in loci.formats used by visad.data.bio | |
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IFormatHandler
Interface for all biological file format readers and writers. |
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IFormatReader
Interface for all biological file format readers. |
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IFormatWriter
Interface for all biological file format writers. |
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